miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Danio rerio



ABOUT THIS RECORD

ID: MNEST034309
species: Danio rerio
miRNA family: mir-140
source: miRBase, original name: dre-mir-140 (MI0002003)

Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAGTGGTTTTACCCTATGGTAG

miRNA*
ACCACAGGGTAGAACCACGGAC

mismatches: 2
bulges: 0

View larger
pre-miRNA
GTGTTTGTCTCCTGTGTCCCGTCAGTGGTTTTACCCTATGGTAGGTTACGTCATGCTGTTCTACCACAGGGTAGAACCACGGACGGGATGTCTGGAGGTG
TCTGC


dot-bracket secondary structure
(((..(..((((.(..(((((((.(((((((((((((.(((((((..(((......)))))))))).))))))))))))).)))))))..)..))))..)
..)))



SIMILARITIES
miRBase gga-mir-140: 2e-33

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-140: 2e-33

Identical with: cfa-mir-140 from miRBase (MNEST026714)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH, Science. 309:310-311(2005)., "MicroRNA expression in zebrafish embryonic development"
[2] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"




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